ReferenceΒΆ

  • Omicscope pipeline
    • EnrichmentScope()
    • Nebula()
    • OmicScope()
  • Omicscope visualization
    • DynamicRange()
    • MAplot()
    • PPInteractions()
    • bar_ident()
    • bar_protein()
    • boxplot_protein()
    • color_scheme()
    • correlation()
    • find_k()
    • heatmap()
    • k_trend()
    • normalization_boxplot()
    • pca()
    • volcano()
    • volcano_2cond()
    • volcano_Multicond()
  • Enrichment visualization
    • dotplot()
    • enrichment_map()
    • enrichment_network()
    • gsea_heatmap()
    • heatmap()
    • number_deps()
  • Nebula visualization
    • barplot()
    • circos_plot()
    • circular_term()
    • diff_reg()
    • distribution_test()
    • dotplot_enrichment()
    • enrichment_overlap()
    • fisher_test()
    • overlap_fisher()
    • protein_overlap()
    • similarity_heatmap()
    • similarity_network()
    • stat_heatmap()
    • stat_matrix()
    • stat_network()
    • whole_network()

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Table of Contents

  • Overview
  • Installation
  • Input
  • How to make pdata
  • OmicScope Overview
  • EnrichmentScope Object
  • Nebula
  • Reference
    • Omicscope pipeline
    • Omicscope visualization
    • Enrichment visualization
    • Nebula visualization
  • Contributing
  • Authors
  • Changelog

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